C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YTH domain family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198492 YTHDF2 9606 + 1:28736621-28769775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373812 YTHDF2-001 28736759-28769775 protein_coding
  ENST00000468863 YTHDF2-005 28739091-28742883 processed_transcript
  ENST00000474884 YTHDF2-003 28736621-28742871 protein_coding
  ENST00000475796 YTHDF2-004 28737750-28742632 processed_transcript
  ENST00000476976 YTHDF2-007 28737750-28742899 processed_transcript
  ENST00000478283 YTHDF2-002 28736950-28769125 processed_transcript
  ENST00000496288 YTHDF2-006 28736965-28743002 protein_coding
  ENST00000541996 YTHDF2-008 28736940-28769775 protein_coding
  ENST00000542507 YTHDF2-201 28736621-28769774 protein_coding
  ENST00000621244 YTHDF2-202 28736971-28769131 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373812ENST00000474884ENST00000478283ENST00000496288ENST00000541996ENST00000542507ENST00000621244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373812 8.126±0.00 7.964±0.00 N/A 6.503±2.55 8.097±0.00 3.549±0.00 10.145±0.00 4.902±2.31 8.000±0.00 2.513±1.88 4.096±0.00 7.476±7.09 10.039±2.41 8.004±0.00
ENST00000474884 N/A N/A N/A N/A N/A 4.470±0.00 1.716±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478283 N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A N/A 2.775±0.00
ENST00000496288 N/A N/A N/A N/A N/A N/A N/A 3.483±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541996 3.091±0.00 6.478±0.00 N/A 5.100±0.00 5.995±0.00 6.665±0.00 1.214±0.00 8.039±0.00 4.455±0.00 7.266±3.54 9.861±0.00 4.361±0.95 3.342±0.00 9.391±1.63
ENST00000542507 N/A N/A 2.571±0.00 N/A N/A 2.241±0.00 N/A N/A 2.989±0.00 N/A 1.672±0.00 7.009±1.97 5.695±3.01 N/A
ENST00000621244 N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A 2.957±0.00 N/A 1.220±0.00 14.085±0.00 16.639±0.00 7.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0006959 TAS humoral immune response
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014498 yth2 YTH domain family 2 protein_coding Danio_rerio
ENSMUSG00000040025 Ythdf2 YTH domain family 2 protein_coding Mus_musculus

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