C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198858 R3HDM4 9606 - 19:896503-913245 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361574 R3HDM4-001 896503-913231 protein_coding
  ENST00000586080 R3HDM4-006 899644-901236 retained_intron
  ENST00000587975 R3HDM4-003 896504-913245 protein_coding
  ENST00000589428 R3HDM4-002 896503-913245 nonsense_mediated_decay
  ENST00000589445 R3HDM4-007 901491-913151 retained_intron
  ENST00000590454 R3HDM4-004 900078-913204 nonsense_mediated_decay
  ENST00000591829 R3HDM4-005 897519-902410 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361574ENST00000587975ENST00000589428ENST00000590454ENST00000591829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361574 12.199±0.00 N/A 0.909±0.00 1.891±0.70 2.206±0.00 2.794±1.96 2.395±2.00 3.522±0.00 3.982±3.43 16.849±14.91 24.231±0.00 23.431±9.30 35.127±12.36 3.718±0.56
ENST00000587975 24.680±0.00 39.037±0.00 N/A 10.865±0.00 17.092±0.00 22.923±0.00 7.318±0.00 19.333±0.00 6.953±0.00 39.919±0.00 N/A 13.516±0.00 N/A 11.393±0.00
ENST00000589428 N/A 20.428±0.00 N/A 6.143±0.00 6.582±0.00 N/A N/A 3.695±2.11 1.369±0.92 N/A 5.264±4.89 0.363±0.00 N/A N/A
ENST00000590454 N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A 0.246±0.00 0.524±0.00 1.024±0.00 0.592±0.00 N/A N/A
ENST00000591829 N/A N/A 1.321±0.00 0.783±0.00 1.183±0.00 N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00011Z CIL_00011Z_0001 CGP 19:867630-913245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063254 r3hdm4 R3H domain containing 4 protein_coding Danio_rerio
ENSMUSG00000035781 R3hdm4 R3H domain containing 4 protein_coding Mus_musculus

Loading