C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 44, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204385 SLC44A4 9606 - 6:31863192-31879046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229729 SLC44A4-001 31863192-31879001 protein_coding
  ENST00000375562 SLC44A4-201 31863195-31879046 protein_coding
  ENST00000414427 SLC44A4-004 31865690-31878967 protein_coding
  ENST00000462671 SLC44A4-003 31874822-31878997 processed_transcript
  ENST00000465707 SLC44A4-002 31874525-31878997 processed_transcript
  ENST00000475563 SLC44A4-005 31869596-31871244 retained_intron
  ENST00000479777 SLC44A4-006 31866059-31871202 retained_intron
  ENST00000487680 SLC44A4-007 31863577-31864680 processed_transcript
  ENST00000544672 SLC44A4-202 31863195-31877671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229729ENST00000375562ENST00000414427ENST00000462671ENST00000465707ENST00000544672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229729 0.341±0.00 0.285±0.00 2.045±0.00 N/A 2.563±0.00 7.623±3.56 N/A 17.638±0.00 N/A 12.981±10.93 N/A 8.197±6.16 3.393±0.00 1.666±0.00
ENST00000375562 N/A 0.347±0.00 N/A 0.154±0.00 N/A N/A 0.121±0.00 7.370±0.00 N/A 9.998±0.00 0.007±0.00 3.996±3.45 N/A 0.620±0.45
ENST00000414427 N/A N/A 1.172±0.00 N/A 4.301±0.00 10.330±0.00 N/A N/A N/A 2.241±0.00 N/A 4.423±0.00 N/A N/A
ENST00000462671 N/A N/A N/A N/A N/A N/A N/A N/A 1.301±0.00 N/A N/A N/A N/A N/A
ENST00000465707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A
ENST00000544672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.303±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PN CIL_0001PN_0002 CGP 6:31863192-31897687

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0008292 IMP acetylcholine biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0030307 IMP positive regulation of cell growth
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0061526 IMP acetylcholine secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027875 SLC44A4 solute carrier family 44, member 4 protein_coding Danio_rerio
ENSMUSG00000007034 Slc44a4 solute carrier family 44, member 4 protein_coding Mus_musculus

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