C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pregnancy specific beta-1-glycoprotein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204941 PSG5 9606 - 19:43166256-43186536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342951 PSG5-003 43167743-43186522 protein_coding
  ENST00000366175 PSG5-001 43166256-43186536 protein_coding
  ENST00000401942 PSG5-014 43167772-43170571 retained_intron
  ENST00000401992 PSG5-009 43183282-43186506 processed_transcript
  ENST00000404580 PSG5-004 43174123-43186494 protein_coding
  ENST00000407356 PSG5-002 43167743-43186490 protein_coding
  ENST00000407568 PSG5-005 43167743-43186494 protein_coding
  ENST00000489220 PSG5-007 43180347-43184935 processed_transcript
  ENST00000599214 PSG5-013 43168122-43170565 retained_intron
  ENST00000599812 PSG5-010 43167743-43186501 protein_coding
  ENST00000600817 PSG5-012 43175663-43186494 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverOvaryPlacentaTestisENST00000342951ENST00000366175ENST00000401992ENST00000404580ENST00000407356ENST00000407568ENST00000489220ENST00000600817
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000342951 N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 75.542±82.58 N/A
ENST00000366175 0.086±0.00 0.091±0.00 0.082±0.00 0.020±0.00 0.031±0.00 0.272±0.00 0.028±0.00 N/A 20.853±18.93 0.060±0.03
ENST00000401992 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00
ENST00000404580 0.015±0.00 N/A 0.084±0.01 0.037±0.02 0.051±0.00 N/A N/A 0.029±0.01 1.915±0.00 0.020±0.00
ENST00000407356 N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 33.371±28.23 N/A
ENST00000407568 0.023±0.00 N/A 0.042±0.00 0.024±0.00 N/A 0.218±0.00 N/A N/A 4.767±0.00 0.031±0.00
ENST00000489220 N/A 0.063±0.00 0.585±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000600817 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UJ CIL_0003UJ_000I CGP 19:42721638-43205603
CIL_0003UJ CIL_0003UJ_000G CGP 19:42728080-43205603
CIL_0003UJ CIL_0003UJ_000L CGP 19:43064211-43186536
CIL_0003UJ CIL_0003UJ_000H CGP 19:43166256-43207299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0007565 TAS female pregnancy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio

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