C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: major histocompatibility complex, class I, C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000206452 HLA-C 9606 - CHR_HSCHR6_MHC_QBL_CTG1:31258588-31261959 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000383323 HLA-C-003 31258588-31261915 protein_coding
  ENST00000400394 HLA-C-001 31258588-31261959 protein_coding
  ENST00000400395 HLA-C-004 31258588-31261915 protein_coding
  ENST00000434884 HLA-C-002 31258588-31261922 protein_coding
  ENST00000448362 HLA-C-007 31260047-31261898 protein_coding
  ENST00000461285 HLA-C-005 31258588-31261878 retained_intron
  ENST00000469544 HLA-C-006 31258588-31261934 nonsense_mediated_decay
  ENST00000479527 HLA-C-008 31260054-31261959 retained_intron
  ENST00000489993 HLA-C-011 31258588-31259503 retained_intron
  ENST00000494871 HLA-C-009 31260043-31261902 processed_transcript
  ENST00000495614 HLA-C-012 31260932-31261919 retained_intron
  ENST00000498011 HLA-C-010 31258588-31260255 retained_intron
  ENST00000618255 HLA-C-202 31259197-31260130 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002480 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0006955 IEA immune response
GO:0009986 ISS cell surface
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0019882 IEA antigen processing and presentation
GO:0030670 TAS phagocytic vesicle membrane
GO:0031901 TAS early endosome membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042605 ISS peptide antigen binding
GO:0042612 IEA MHC class I protein complex
GO:0045087 TAS innate immune response
GO:0046977 IDA TAP binding
GO:0050776 TAS regulation of immune response
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway
GO:0071556 TAS integral component of lumenal side of endoplasmic reticulum membrane

Homologs

No Homologs available.

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