C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213420 GPC2 9606 - 7:100169606-100177372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292377 GPC2-001 100169606-100177367 protein_coding
  ENST00000471050 GPC2-003 100169629-100174724 processed_transcript
  ENST00000471717 GPC2-002 100173458-100177372 retained_intron
  ENST00000480087 GPC2-005 100172190-100177369 processed_transcript
  ENST00000482569 GPC2-009 100176229-100177369 processed_transcript
  ENST00000486702 GPC2-008 100171069-100172218 retained_intron
  ENST00000490629 GPC2-007 100171651-100175785 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000292377ENST00000471050ENST00000471717ENST00000480087ENST00000482569ENST00000490629
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000292377 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.374±0.13 N/A 6.185±3.50
ENST00000471050 0.220±0.00 N/A 0.904±0.00 N/A 0.132±0.00 0.062±0.00 0.196±0.00 0.244±0.00 0.056±0.00 0.656±0.00 0.110±0.08 0.722±0.00
ENST00000471717 N/A 0.858±0.00 N/A 0.372±0.00 0.836±0.00 N/A 0.188±0.00 0.087±0.00 N/A 0.066±0.00 0.016±0.00 N/A
ENST00000480087 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.617±0.06 0.251±0.00 N/A
ENST00000482569 N/A N/A N/A 1.345±0.00 0.377±0.00 N/A N/A N/A N/A 0.921±0.00 N/A N/A
ENST00000490629 N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005783 IDA endoplasmic reticulum
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007224 IEA smoothened signaling pathway
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0030182 IEA neuron differentiation
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037150 gpc2 glypican 2 protein_coding Danio_rerio
ENSMUSG00000029510 Gpc2 glypican 2 (cerebroglycan) protein_coding Mus_musculus

Loading