C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex central element protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000217442 SYCE3 9606 - 22:50551112-50562905 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402753 SYCE3-001 50551197-50556432 protein_coding
  ENST00000406915 SYCE3-002 50551112-50562905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000402753ENST00000406915
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000402753 N/A 0.053±0.00 N/A N/A 0.133±0.00 N/A N/A 0.149±0.00 N/A 0.460±0.00 0.434±0.04 N/A
ENST00000406915 0.207±0.00 N/A 0.264±0.00 0.816±0.00 0.269±0.00 0.125±0.00 0.475±0.00 N/A 0.339±0.00 0.376±0.09 0.601±0.00 96.275±43.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MI CIL_0003MI_0001 CGP 22:50548033-50562905
CIL_00028I CIL_00028I_0001 CGP 22:50551112-50578465

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000801 ISS central element
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005694 ISS chromosome
GO:0007130 ISS synaptonemal complex assembly
GO:0007131 ISS reciprocal meiotic recombination
GO:0007283 ISS spermatogenesis
GO:0043065 IEA positive regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092889 SYCE3 synaptonemal complex central element protein 3 protein_coding Danio_rerio
ENSMUSG00000078938 Syce3 synaptonemal complex central element protein 3 protein_coding Mus_musculus

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