C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HOXD antisense growth-associated long non-coding RNA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000224189 HAGLR 9606 - 2:176173195-176188958 antisense
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000413969 HAGLR-005 176176456-176188958 antisense
  ENST00000416928 HAGLR-001 176173195-176178284 antisense
  ENST00000417086 HAGLR-003 176175994-176188540 antisense
  ENST00000425005 HAGLR-002 176176480-176188479 antisense
  ENST00000436126 HAGLR-004 176176186-176188269 antisense
  ENST00000447538 HAGLR-011 176176380-176178084 antisense
  ENST00000452365 HAGLR-008 176176524-176188531 antisense
  ENST00000456876 HAGLR-006 176176472-176178125 antisense
  ENST00000546798 HAGLR-012 176176386-176178125 antisense
  ENST00000547207 HAGLR-007 176176159-176177568 antisense
  ENST00000549329 HAGLR-010 176176386-176178042 antisense
  ENST00000552156 HAGLR-009 176176472-176178083 antisense

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000413969ENST00000416928ENST00000417086ENST00000447538ENST00000452365ENST00000456876ENST00000547207ENST00000552156
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000413969 N/A N/A N/A N/A 1.133±0.00 N/A N/A N/A N/A N/A
ENST00000416928 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.019±0.01 6.878±4.43
ENST00000417086 1.208±0.00 0.721±0.00 2.069±0.00 N/A N/A 2.660±0.00 N/A 1.341±0.00 N/A N/A
ENST00000447538 N/A N/A 4.708±0.00 N/A N/A N/A N/A 3.107±0.00 N/A N/A
ENST00000452365 N/A 0.468±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456876 N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A N/A
ENST00000547207 N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000552156 N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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