C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000224578 HNRNPA1P48 9606 + 16:51645756-51647132 transcribed_processed_pseudogene
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000562726 HNRNPA1P48-002 51645756-51647132 processed_transcript
  ENST00000565308 HNRNPA1P48-001 51645820-51646780 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000562726ENST00000565308
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000562726 3.390±0.00 4.623±0.00 0.528±0.47 1.029±0.88 1.913±1.79 1.411±0.00 1.226±1.13 0.530±0.51 2.823±0.00 2.455±0.00 3.657±2.10 2.863±1.56 2.649±0.76
ENST00000565308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.208±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_0008AN CIL_0008AN_0001 VISTA 16:51055384-51656808
CIL_0007YA CIL_0007YA_0001 VISTA 16:51157888-51759114
CIL_0008AM CIL_0008AM_0001 VISTA 16:51226285-51827014
CIL_0008AP CIL_0008AP_0001 VISTA 16:51242814-51844190
CIL_0008AO CIL_0008AO_0001 VISTA 16:51323899-51924805
CIL_0008AR CIL_0008AR_0001 VISTA 16:51337270-51938128
CIL_0008AQ CIL_0008AQ_0001 VISTA 16:51398237-51999703
CIL_0008J6 CIL_0008J6_0001 VISTA 16:51423280-52024332
CIL_0008J7 CIL_0008J7_0001 VISTA 16:51452269-52053458
CIL_0008J5 CIL_0008J5_0001 VISTA 16:51483394-52084521
CIL_00085D CIL_00085D_0001 VISTA 16:51519686-52121020
CIL_0008J2 CIL_0008J2_0001 VISTA 16:51624376-52225776

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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