C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nucleolar RNA host gene 23 (non-protein coding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000225746 SNHG23 9606 + 14:100937401-100960199 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000414488 SNHG23-008 100948978-100958550 lincRNA
  ENST00000427085 SNHG23-006 100947083-100952752 lincRNA
  ENST00000434716 SNHG23-001 100949050-100956222 lincRNA
  ENST00000443252 SNHG23-005 100958262-100960199 lincRNA
  ENST00000554369 SNHG23-003 100951444-100960179 lincRNA
  ENST00000554485 SNHG23-009 100938928-100945160 lincRNA
  ENST00000555354 SNHG23-010 100938886-100947207 lincRNA
  ENST00000556637 SNHG23-004 100954608-100960179 lincRNA
  ENST00000556720 SNHG23-007 100937401-100947076 lincRNA

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000414488ENST00000427085ENST00000434716ENST00000443252ENST00000554369ENST00000554485ENST00000555354ENST00000556637ENST00000556720
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000414488 N/A N/A N/A 1.653±0.00 0.596±0.00 0.140±0.00 N/A N/A N/A N/A 2.646±3.39 0.240±0.18 0.192±0.00
ENST00000427085 N/A N/A 1.220±0.00 0.134±0.00 N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A 0.181±0.00
ENST00000434716 N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENST00000443252 0.430±0.00 N/A N/A N/A 0.033±0.00 0.080±0.00 1.134±0.00 N/A 0.033±0.00 N/A 0.127±0.00 0.201±0.10 0.346±0.00
ENST00000554369 0.108±0.00 0.169±0.00 N/A N/A N/A 0.077±0.00 N/A 0.093±0.00 N/A 0.209±0.00 0.076±0.00 7.776±0.00 N/A
ENST00000554485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.236±0.00 N/A N/A
ENST00000555354 N/A N/A N/A N/A 1.393±0.00 0.072±0.00 0.348±0.00 N/A 2.569±0.00 N/A 0.863±0.00 0.103±0.00 N/A
ENST00000556637 N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.285±0.24 0.095±0.00 N/A
ENST00000556720 N/A N/A 15.908±0.00 N/A 0.129±0.00 2.092±0.00 0.116±0.00 0.107±0.00 N/A 0.955±0.00 3.861±5.61 0.269±0.08 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q7 CIL_0007Q7_0001 VISTA 14:100481347-101081347
CIL_0004AB CIL_0004AB_0001 CGP 14:100880655-101563452

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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