C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000225859  |
DDX39B | 9606 | - |
CHR_HSCHR6_MHC_MANN_CTG1:31569699-31586038  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000411415 |
DDX39B-016 | 31576101-31581189 | protein_coding | ||
| ENST00000412246 |
DDX39B-012 | 31578297-31581446 | protein_coding | ||
| ENST00000412330 |
DDX39B-002 | 31569699-31581908 | protein_coding | ||
| ENST00000416969 |
DDX39B-018 | 31574873-31580944 | protein_coding | ||
| ENST00000432433 |
DDX39B-013 | 31576087-31581449 | protein_coding | ||
| ENST00000433293 |
DDX39B-020 | 31570258-31573989 | protein_coding | ||
| ENST00000438301 |
DDX39B-009 | 31574866-31581478 | protein_coding | ||
| ENST00000439857 |
DDX39B-010 | 31578360-31581463 | protein_coding | ||
| ENST00000441901 |
DDX39B-015 | 31578677-31581333 | protein_coding | ||
| ENST00000444480 |
DDX39B-014 | 31574885-31581397 | protein_coding | ||
| ENST00000445218 |
DDX39B-003 | 31569699-31586038 | protein_coding | ||
| ENST00000446341 |
DDX39B-006 | 31569699-31580012 | protein_coding | ||
| ENST00000448000 |
DDX39B-019 | 31570781-31581441 | protein_coding | ||
| ENST00000448296 |
DDX39B-001 | 31569699-31581908 | protein_coding | ||
| ENST00000448658 |
DDX39B-011 | 31578309-31581451 | protein_coding | ||
| ENST00000455916 |
DDX39B-017 | 31572259-31580991 | protein_coding | ||
| ENST00000465854 |
DDX39B-007 | 31569699-31571223 | retained_intron | ||
| ENST00000467175 |
DDX39B-005 | 31571892-31581461 | retained_intron | ||
| ENST00000472906 |
DDX39B-023 | 31569723-31570414 | processed_transcript | ||
| ENST00000473685 |
DDX39B-004 | 31569699-31581477 | retained_intron | ||
| ENST00000484344 |
DDX39B-022 | 31569699-31574953 | nonsense_mediated_decay | ||
| ENST00000489325 |
DDX39B-008 | 31570753-31581861 | processed_transcript | ||
| ENST00000490964 |
DDX39B-021 | 31570595-31571150 | retained_intron | ||
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000245 | IDA | spliceosomal complex assembly |
| GO:0000346 | IDA | transcription export complex |
| GO:0000398 | IGI | mRNA splicing, via spliceosome |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003677 | IEA | DNA binding |
| GO:0004004 | IDA | ATP-dependent RNA helicase activity |
| GO:0004386 | IEA | helicase activity |
| GO:0005515 | IPI | protein binding |
| GO:0005524 | IEA | ATP binding |
| GO:0005634 | IDA | nucleus |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0005687 | IDA | U4 snRNP |
| GO:0005688 | IDA | U6 snRNP |
| GO:0005737 | IDA | cytoplasm |
| GO:0006200 | IDA | ATP catabolic process |
| GO:0006406 | IGI | mRNA export from nucleus |
| GO:0008152 | IEA | metabolic process |
| GO:0008186 | IDA | RNA-dependent ATPase activity |
| GO:0008380 | IDA | RNA splicing |
| GO:0010501 | IDA | RNA secondary structure unwinding |
| GO:0016787 | IEA | hydrolase activity |
| GO:0017070 | IDA | U6 snRNA binding |
| GO:0030621 | IDA | U4 snRNA binding |
| GO:0032786 | IMP | positive regulation of DNA-templated transcription, elongation |
| GO:0043008 | IDA | ATP-dependent protein binding |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0046784 | IDA | viral mRNA export from host cell nucleus |
| GO:2000002 | IMP | negative regulation of DNA damage checkpoint |
Homologs | |||||
| No Homologs available. | |||||
|---|---|---|---|---|---|
