C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secretory carrier membrane protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000227500 SCAMP4 9606 + 19:1905214-1926013 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316097 SCAMP4-001 1905214-1926011 protein_coding
  ENST00000409472 SCAMP4-003 1905404-1926013 protein_coding
  ENST00000411971 SCAMP4-008 1908264-1918965 protein_coding
  ENST00000414057 SCAMP4-011 1905378-1925016 protein_coding
  ENST00000452128 SCAMP4-010 1905372-1919204 retained_intron
  ENST00000460767 SCAMP4-006 1905391-1918961 nonsense_mediated_decay
  ENST00000472442 SCAMP4-005 1922113-1926005 retained_intron
  ENST00000489554 SCAMP4-007 1905399-1920743 processed_transcript
  ENST00000585335 SCAMP4-014 1918644-1922156 processed_transcript
  ENST00000588555 SCAMP4-002 1905400-1907184 retained_intron
  ENST00000588907 SCAMP4-013 1908281-1918189 protein_coding
  ENST00000590266 SCAMP4-009 1913090-1918161 protein_coding
  ENST00000621748 SCAMP4-012 1914521-1924701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316097ENST00000409472ENST00000414057ENST00000452128ENST00000489554ENST00000588555ENST00000590266ENST00000621748
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316097 10.699±0.00 9.295±0.00 8.098±6.20 4.871±4.13 3.746±0.00 0.120±0.00 N/A 0.307±0.00 1.265±0.00 N/A 16.728±11.09 N/A 11.739±5.24
ENST00000409472 7.552±0.00 8.258±0.00 4.249±0.00 8.632±0.00 10.310±0.00 1.715±1.53 9.633±0.00 5.339±0.00 9.905±0.00 3.165±0.34 8.973±8.55 10.918±3.88 8.556±3.47
ENST00000414057 N/A N/A N/A N/A 2.071±0.00 N/A N/A 1.766±0.00 N/A N/A 24.944±0.00 N/A N/A
ENST00000452128 N/A N/A N/A 1.637±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489554 N/A N/A N/A N/A N/A N/A 1.791±0.00 N/A N/A N/A 3.567±0.00 N/A N/A
ENST00000588555 N/A N/A N/A N/A N/A 0.081±0.00 0.241±0.00 N/A N/A N/A N/A N/A N/A
ENST00000590266 N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000621748 N/A N/A N/A 1.698±0.00 N/A N/A 1.273±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010531 scamp4 secretory carrier membrane protein 4 protein_coding Danio_rerio
ENSMUSG00000078441 Scamp4 secretory carrier membrane protein 4 protein_coding Mus_musculus

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