C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: long intergenic non-protein coding RNA 271
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000231028 LINC00271 9606 + 6:135497801-135716055 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000421378 LINC00271-003 135497854-135690835 lincRNA
  ENST00000436554 LINC00271-001 135497956-135521149 lincRNA
  ENST00000438618 LINC00271-006 135497969-135642955 lincRNA
  ENST00000579057 LINC00271-005 135497937-135517059 lincRNA
  ENST00000579339 LINC00271-004 135497801-135518789 lincRNA
  ENST00000579944 LINC00271-007 135672314-135716055 lincRNA
  ENST00000580741 LINC00271-002 135497806-135518789 lincRNA

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000421378ENST00000436554ENST00000438618ENST00000579057ENST00000579339ENST00000579944ENST00000580741
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000421378 0.007±0.00 0.154±0.00 0.324±0.00 0.126±0.00 0.137±0.00 0.026±0.00 0.601±0.00 0.012±0.00 0.012±0.00 N/A 0.182±0.10 0.034±0.00 0.660±0.16
ENST00000436554 0.090±0.00 N/A N/A N/A 0.089±0.00 N/A N/A N/A 1.180±0.00 N/A 0.271±0.00 N/A N/A
ENST00000438618 N/A N/A N/A 0.089±0.00 N/A 0.017±0.00 0.175±0.00 N/A 0.470±0.00 N/A 0.044±0.03 0.028±0.00 0.691±0.02
ENST00000579057 N/A 0.146±0.00 0.556±0.00 N/A 0.110±0.00 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000579339 N/A N/A 1.100±0.32 0.217±0.00 N/A N/A N/A N/A N/A 0.109±0.00 0.759±0.44 N/A N/A
ENST00000579944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.03 2.616±0.00
ENST00000580741 N/A N/A N/A N/A N/A N/A 1.976±0.00 N/A 0.104±0.00 N/A N/A N/A 1.283±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AJ CIL_0009AJ_0001 VISTA 6:134980560-135582914

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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