C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000233927 RPS28 9606 + 19:8321158-8323340 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000417088 RPS28-004 8321634-8322396 retained_intron
  ENST00000449223 RPS28-002 8321158-8322946 retained_intron
  ENST00000600659 RPS28-001 8321500-8323340 protein_coding
  ENST00000602140 RPS28-003 8321495-8322492 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417088ENST00000600659ENST00000602140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417088 691.449±0.00 1117.220±0.00 18.830±0.00 138.637±106.91 455.117±377.39 592.585±495.55 81.556±58.78 239.055±179.17 140.257±89.10 282.243±239.97 237.913±166.78 848.162±615.87 921.179±310.52 478.493±319.16
ENST00000600659 N/A N/A 4.237±0.00 14.080±0.00 15.838±0.00 16.583±0.00 6.995±0.00 11.214±0.00 11.983±0.00 9.516±0.00 14.089±0.00 80.070±50.69 70.475±14.71 N/A
ENST00000602140 84.455±0.00 140.701±0.00 N/A N/A 103.482±0.00 79.127±0.00 24.004±0.00 N/A 22.968±0.00 59.809±0.00 51.142±0.00 N/A N/A 66.222±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035860 rps28 ribosomal protein S28 protein_coding Danio_rerio
ENSMUSG00000066407 Gm10263 predicted gene 10263 protein_coding Mus_musculus

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