C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WAS protein family homolog 4 pseudogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000234769 WASH4P 9606 - 16:14043-19452 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326592 WASH4P-001 14043-19448 protein_coding
  ENST00000462860 WASH4P-002 14085-19452 nonsense_mediated_decay
  ENST00000468574 WASH4P-006 14085-17083 retained_intron
  ENST00000470283 WASH4P-010 14085-16383 retained_intron
  ENST00000470725 WASH4P-008 14088-18422 retained_intron
  ENST00000474799 WASH4P-011 14044-14965 retained_intron
  ENST00000477365 WASH4P-013 14085-18940 retained_intron
  ENST00000483390 WASH4P-009 15739-18764 nonsense_mediated_decay
  ENST00000487568 WASH4P-005 14117-16241 retained_intron
  ENST00000494585 WASH4P-007 17711-18508 retained_intron
  ENST00000495251 WASH4P-003 14085-19409 nonsense_mediated_decay
  ENST00000538848 WASH4P-015 16411-18843 nonsense_mediated_decay
  ENST00000564273 WASH4P-014 14085-18797 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326592ENST00000462860ENST00000470283ENST00000470725ENST00000477365ENST00000487568ENST00000495251ENST00000564273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326592 N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462860 N/A N/A N/A 0.369±0.00 0.433±0.00 N/A N/A N/A N/A N/A 0.213±0.00 0.531±0.31 N/A N/A
ENST00000470283 N/A N/A N/A N/A N/A N/A N/A 0.911±0.00 0.392±0.00 0.807±0.00 0.247±0.00 0.174±0.00 N/A N/A
ENST00000470725 0.264±0.00 1.822±0.00 0.137±0.00 0.341±0.14 0.518±0.00 0.450±0.00 0.290±0.00 0.381±0.28 N/A N/A 0.037±0.01 1.597±1.47 0.408±0.22 1.809±1.08
ENST00000477365 N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A 0.071±0.00 N/A N/A
ENST00000487568 N/A N/A N/A 0.524±0.00 0.695±0.00 N/A N/A 0.556±0.00 0.409±0.13 0.633±0.00 N/A 0.604±0.00 0.341±0.00 N/A
ENST00000495251 0.473±0.00 2.019±0.00 0.547±0.00 N/A 0.357±0.00 0.391±0.00 0.192±0.07 0.542±0.46 0.235±0.03 0.749±0.00 0.232±0.00 5.724±0.00 0.862±0.48 2.329±1.51
ENST00000564273 N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005769 ISS early endosome
GO:0016020 IEA membrane
GO:0016197 ISS endosomal transport
GO:0034314 ISS Arp2/3 complex-mediated actin nucleation
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043014 ISS alpha-tubulin binding
GO:0055037 ISS recycling endosome
GO:0071203 ISS WASH complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063457 wash WAS protein family homolog protein_coding Danio_rerio
ENSMUSG00000024101 Wash WAS protein family homolog protein_coding Mus_musculus

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