C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000235439  |
DDX39B | 9606 | - |
CHR_HSCHR6_MHC_SSTO_CTG1:31520968-31533197  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000417136 |
DDX39B-016 | 31527372-31532478 | protein_coding | ||
| ENST00000419913 |
DDX39B-012 | 31529568-31532735 | protein_coding | ||
| ENST00000427489 |
DDX39B-019 | 31522051-31532730 | protein_coding | ||
| ENST00000428291 |
DDX39B-013 | 31527358-31532738 | protein_coding | ||
| ENST00000430784 |
DDX39B-001 | 31520968-31533197 | protein_coding | ||
| ENST00000431360 |
DDX39B-002 | 31520968-31533197 | protein_coding | ||
| ENST00000436995 |
DDX39B-018 | 31526144-31532233 | protein_coding | ||
| ENST00000439927 |
DDX39B-017 | 31523529-31532280 | protein_coding | ||
| ENST00000444267 |
DDX39B-014 | 31526156-31532686 | protein_coding | ||
| ENST00000444726 |
DDX39B-009 | 31526137-31532767 | protein_coding | ||
| ENST00000449010 |
DDX39B-010 | 31529631-31532752 | protein_coding | ||
| ENST00000450987 |
DDX39B-006 | 31520968-31531285 | protein_coding | ||
| ENST00000453799 |
DDX39B-015 | 31529948-31532622 | protein_coding | ||
| ENST00000455324 |
DDX39B-011 | 31529580-31532740 | protein_coding | ||
| ENST00000455400 |
DDX39B-020 | 31521528-31525260 | protein_coding | ||
| ENST00000460280 |
DDX39B-021 | 31521865-31522420 | retained_intron | ||
| ENST00000470514 |
DDX39B-023 | 31520992-31521684 | processed_transcript | ||
| ENST00000487541 |
DDX39B-007 | 31520968-31522493 | retained_intron | ||
| ENST00000489688 |
DDX39B-004 | 31520968-31532766 | retained_intron | ||
| ENST00000490297 |
DDX39B-008 | 31522023-31533150 | retained_intron | ||
| ENST00000493860 |
DDX39B-022 | 31520968-31526224 | nonsense_mediated_decay | ||
| ENST00000496801 |
DDX39B-005 | 31523162-31532750 | retained_intron | ||
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000245 | IDA | spliceosomal complex assembly |
| GO:0000346 | IDA | transcription export complex |
| GO:0000398 | IGI | mRNA splicing, via spliceosome |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003677 | IEA | DNA binding |
| GO:0004004 | IDA | ATP-dependent RNA helicase activity |
| GO:0004386 | IEA | helicase activity |
| GO:0005515 | IPI | protein binding |
| GO:0005524 | IEA | ATP binding |
| GO:0005634 | IDA | nucleus |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0005687 | IDA | U4 snRNP |
| GO:0005688 | IDA | U6 snRNP |
| GO:0005737 | IDA | cytoplasm |
| GO:0006200 | IDA | ATP catabolic process |
| GO:0006406 | IGI | mRNA export from nucleus |
| GO:0008152 | IEA | metabolic process |
| GO:0008186 | IDA | RNA-dependent ATPase activity |
| GO:0008380 | IDA | RNA splicing |
| GO:0010501 | IDA | RNA secondary structure unwinding |
| GO:0016787 | IEA | hydrolase activity |
| GO:0017070 | IDA | U6 snRNA binding |
| GO:0030621 | IDA | U4 snRNA binding |
| GO:0032786 | IMP | positive regulation of DNA-templated transcription, elongation |
| GO:0043008 | IDA | ATP-dependent protein binding |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0046784 | IDA | viral mRNA export from host cell nucleus |
| GO:2000002 | IMP | negative regulation of DNA damage checkpoint |
Homologs | |||||
| No Homologs available. | |||||
|---|---|---|---|---|---|
