C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: major histocompatibility complex, class I, C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000237022 HLA-C 9606 - CHR_HSCHR6_MHC_MANN_CTG1:31312208-31315579 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000414249 HLA-C-004 31312208-31315535 protein_coding
  ENST00000419590 HLA-C-002 31312208-31315542 protein_coding
  ENST00000437368 HLA-C-007 31313667-31315518 protein_coding
  ENST00000438171 HLA-C-001 31312208-31315579 protein_coding
  ENST00000453809 HLA-C-003 31312208-31315535 protein_coding
  ENST00000459694 HLA-C-010 31312208-31313875 retained_intron
  ENST00000465497 HLA-C-005 31312208-31315499 retained_intron
  ENST00000480429 HLA-C-008 31313674-31315579 retained_intron
  ENST00000487551 HLA-C-011 31312208-31313123 retained_intron
  ENST00000488273 HLA-C-006 31312208-31315554 nonsense_mediated_decay
  ENST00000495207 HLA-C-012 31314552-31315539 retained_intron
  ENST00000495898 HLA-C-009 31313663-31315522 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002480 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent
GO:0002486 IDA antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0006955 IEA immune response
GO:0009986 IDA:ISS cell surface
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0019882 IEA antigen processing and presentation
GO:0030670 TAS phagocytic vesicle membrane
GO:0031901 TAS early endosome membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042605 IDA:ISS peptide antigen binding
GO:0042612 IDA:ISS:IEA MHC class I protein complex
GO:0046977 IDA TAP binding
GO:0050776 TAS regulation of immune response
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway
GO:0071556 TAS integral component of lumenal side of endoplasmic reticulum membrane

Homologs

No Homologs available.

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