C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pregnancy specific beta-1-glycoprotein 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000243130 PSG11 9606 - 19:43007656-43026512 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306322 PSG11-005 43007900-43026469 protein_coding
  ENST00000320078 PSG11-001 43007656-43026512 protein_coding
  ENST00000403486 PSG11-004 43007656-43026466 protein_coding
  ENST00000488205 PSG11-003 43018688-43026474 retained_intron
  ENST00000593983 PSG11-007 43007658-43025352 nonsense_mediated_decay
  ENST00000593994 PSG11-006 43007830-43010706 retained_intron
  ENST00000594655 PSG11-013 43014081-43026462 retained_intron
  ENST00000595138 PSG11-014 43014254-43026462 retained_intron
  ENST00000595312 PSG11-010 43017231-43019047 processed_transcript
  ENST00000597093 PSG11-009 43018342-43024844 retained_intron
  ENST00000598133 PSG11-011 43015120-43026448 protein_coding
  ENST00000599245 PSG11-008 43024467-43026454 retained_intron
  ENST00000599976 PSG11-012 43010270-43015274 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLungOvaryPlacentaTestisENST00000306322ENST00000320078ENST00000593983ENST00000593994ENST00000594655ENST00000597093
Transcript ID Adipose Brain Breast Lung Ovary Placenta Testis
ENST00000306322 N/A N/A 0.298±0.00 N/A N/A N/A N/A
ENST00000320078 N/A N/A N/A N/A N/A 101.754±0.00 N/A
ENST00000593983 N/A 0.019±0.00 N/A N/A 0.017±0.00 N/A N/A
ENST00000593994 0.243±0.00 0.105±0.00 0.395±0.00 0.262±0.00 0.078±0.00 N/A 0.106±0.00
ENST00000594655 N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENST00000597093 N/A N/A N/A 0.120±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UJ CIL_0003UJ_000I CGP 19:42721638-43205603
CIL_0003UJ CIL_0003UJ_000G CGP 19:42728080-43205603
CIL_0003UJ CIL_0003UJ_000K CGP 19:42866464-43082671
CIL_0003UJ CIL_0003UJ_000J CGP 19:42906822-43082671
CIL_0003UJ CIL_0003UJ_000M CGP 19:43007656-43083045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0007565 TAS female pregnancy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio

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