C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pregnancy specific beta-1-glycoprotein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000243137 PSG4 9606 - 19:43192702-43207299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244295 PSG4-003 43192751-43205563 protein_coding
  ENST00000405312 PSG4-001 43192702-43205774 protein_coding
  ENST00000433626 PSG4-201 43192704-43205774 protein_coding
  ENST00000451895 PSG4-004 43197997-43205638 protein_coding
  ENST00000490769 PSG4-002 43192738-43194886 retained_intron
  ENST00000495316 PSG4-005 43197744-43204051 retained_intron
  ENST00000595949 PSG4-013 43194999-43205612 nonsense_mediated_decay
  ENST00000596199 PSG4-007 43197915-43205638 retained_intron
  ENST00000596907 PSG4-009 43194340-43205635 protein_coding
  ENST00000597349 PSG4-014 43193955-43195149 retained_intron
  ENST00000597374 PSG4-015 43193606-43198079 protein_coding
  ENST00000597912 PSG4-016 43203089-43207299 retained_intron
  ENST00000599371 PSG4-008 43196458-43198274 protein_coding
  ENST00000599391 PSG4-011 43194398-43205551 protein_coding
  ENST00000599746 PSG4-010 43194509-43204251 protein_coding
  ENST00000600572 PSG4-006 43198258-43204614 protein_coding
  ENST00000601041 PSG4-012 43194406-43205633 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLungOvaryPlacentaENST00000244295ENST00000405312ENST00000433626ENST00000451895ENST00000490769ENST00000597912ENST00000599371ENST00000600572ENST00000601041
Transcript ID Bladder Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000244295 N/A N/A N/A N/A N/A N/A 0.039±0.00 22.324±0.00
ENST00000405312 N/A N/A N/A N/A N/A N/A N/A 505.608±365.02
ENST00000433626 0.192±0.00 N/A N/A N/A N/A N/A 0.155±0.00 N/A
ENST00000451895 N/A N/A N/A N/A 0.353±0.00 N/A N/A N/A
ENST00000490769 N/A 0.041±0.00 0.327±0.00 0.147±0.00 0.213±0.00 N/A 0.433±0.00 872.081±0.00
ENST00000597912 N/A N/A 0.095±0.00 N/A N/A 0.098±0.00 0.085±0.00 N/A
ENST00000599371 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A
ENST00000600572 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000601041 N/A N/A N/A N/A 0.689±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UJ CIL_0003UJ_000I CGP 19:42721638-43205603
CIL_0003UJ CIL_0003UJ_000G CGP 19:42728080-43205603
CIL_0003UJ CIL_0003UJ_000H CGP 19:43166256-43207299
CIL_0003UJ CIL_0003UJ_000N CGP 19:43192702-43269530

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007565 TAS female pregnancy
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio

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