C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin alpha subfamily C, 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000243232 PCDHAC2 9606 + 5:140966235-141012344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289269 PCDHAC2-001 140966235-141012344 protein_coding
  ENST00000613766 PCDHAC2-003 140988913-141010100 processed_transcript
  ENST00000615316 PCDHAC2-002 140966470-140969480 protein_coding
  ENST00000617566 PCDHAC2-004 140982345-141009691 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000289269ENST00000615316
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000289269 0.815±0.00 9.939±1.63 0.640±0.00 0.089±0.01 0.102±0.00 0.216±0.15 0.812±0.00 0.249±0.00 N/A 0.938±0.05
ENST00000615316 N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A 1.042±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058875 pcdh2ac protocadherin 2 alpha c protein_coding Danio_rerio
ENSDARG00000097170 pcdh1a3 protocadherin 1 alpha 3 protein_coding Danio_rerio

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