C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member J
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000246705 H2AFJ 9606 + 12:14774383-14778002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389078 H2AFJ-005 14774419-14775581 nonsense_mediated_decay
  ENST00000501744 H2AFJ-002 14774582-14778002 nonsense_mediated_decay
  ENST00000544848 H2AFJ-001 14774383-14775026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389078ENST00000501744ENST00000544848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389078 N/A N/A 1.244±0.00 0.569±0.00 N/A N/A 0.468±0.00 N/A N/A N/A N/A 2.494±0.00 N/A N/A
ENST00000501744 2.006±0.00 1.929±0.00 N/A 0.234±0.00 1.560±1.08 1.325±0.76 0.365±0.30 1.470±0.00 0.705±0.00 1.919±0.00 0.346±0.26 0.950±0.49 1.600±0.09 N/A
ENST00000544848 217.654±0.00 43.143±0.00 2.578±0.00 13.218±10.81 110.240±98.20 63.257±48.99 16.222±14.20 32.713±28.02 29.537±14.39 78.427±74.36 17.271±12.72 39.350±22.17 134.952±72.44 318.156±69.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HB CIL_0003HB_0001 CGP 12:14774383-14803540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068995 zgc:101846 zgc:101846 protein_coding Danio_rerio
ENSDARG00000070286 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000074260 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075220 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075379 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000076507 protein_coding Danio_rerio
ENSDARG00000086552 protein_coding Danio_rerio
ENSDARG00000086604 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000087451 protein_coding Danio_rerio
ENSDARG00000088291 protein_coding Danio_rerio
ENSDARG00000088686 protein_coding Danio_rerio
ENSDARG00000091205 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSMUSG00000060032 H2afj H2A histone family, member J protein_coding Mus_musculus

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