C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin gamma subfamily A, 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000253846 PCDHGA10 9606 + 5:141412987-141512979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398610 PCDHGA10-001 141413176-141512979 protein_coding
  ENST00000612503 PCDHGA10-002 141412987-141417448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000398610
Transcript ID Ovary
ENST00000398610 4.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037682 BX005294.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000043951 pcdh1g9 protocadherin 1 gamma 9 protein_coding Danio_rerio
ENSDARG00000043953 BX119910.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000057519 CT737184.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000062608 pcdh1g2 protocadherin 1 gamma 2 protein_coding Danio_rerio
ENSDARG00000062610 pcdh1g32 protocadherin 1 gamma 32 protein_coding Danio_rerio
ENSDARG00000071890 pcdh2g7 protocadherin 2 gamma 7 protein_coding Danio_rerio
ENSDARG00000071893 pcdh2g4 protocadherin 2 gamma 4 protein_coding Danio_rerio
ENSDARG00000071894 pcdh2g3 protocadherin 2 gamma 3 protein_coding Danio_rerio
ENSDARG00000071895 pcdh2g1 protocadherin 2 gamma 1 protein_coding Danio_rerio
ENSDARG00000074089 BX119910.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074959 pcdh2g3 protocadherin 2 gamma 3 protein_coding Danio_rerio
ENSDARG00000075260 CT573264.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000075724 pcdh2g1 protocadherin 2 gamma 1 protein_coding Danio_rerio
ENSDARG00000075935 BX005294.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000076107 pcdh1gb9 protocadherin 1 gamma b 9 protein_coding Danio_rerio
ENSDARG00000076461 pcdh1g18 protocadherin 1 gamma 18 protein_coding Danio_rerio
ENSDARG00000076707 pcdh2g29 protocadherin 2 gamma 29 protein_coding Danio_rerio
ENSDARG00000076777 BX119910.5 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077539 BX119910.7 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077771 pcdh2g28 protocadherin 2 gamma 28 protein_coding Danio_rerio
ENSDARG00000077854 BX119910.8 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000078190 zgc:193751 zgc:193751 protein_coding Danio_rerio
ENSDARG00000078339 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000078400 BX005294.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000078940 pcdh2g12 protocadherin 2 gamma 12 protein_coding Danio_rerio
ENSDARG00000078951 BX119910.10 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079424 CT573264.5 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079640 pcdh2g16 protocadherin 2 gamma 16 protein_coding Danio_rerio
ENSDARG00000079770 BX119910.11 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000086969 CR774179.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088475 pcdh1gb9 protocadherin 1 gamma b 9 protein_coding Danio_rerio
ENSDARG00000090614 BX005294.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093027 BX119910.12 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000095637 BX005294.5 Uncharacterized protein protein_coding Danio_rerio

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