C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nucleolar RNA host gene 1 (non-protein coding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000255717 SNHG1 9606 - 11:62851988-62855914 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000535076 SNHG1-022 62852048-62853696 retained_intron
  ENST00000535689 SNHG1-016 62853354-62855488 retained_intron
  ENST00000537024 SNHG1-013 62853547-62855479 retained_intron
  ENST00000537068 SNHG1-025 62851988-62855881 lincRNA
  ENST00000537869 SNHG1-004 62851991-62855460 lincRNA
  ENST00000537925 SNHG1-002 62851988-62855867 lincRNA
  ENST00000537965 SNHG1-011 62854368-62855488 retained_intron
  ENST00000538266 SNHG1-019 62852609-62855467 lincRNA
  ENST00000538654 SNHG1-003 62851989-62855885 retained_intron
  ENST00000539303 SNHG1-023 62853573-62855174 lincRNA
  ENST00000539921 SNHG1-006 62851988-62855236 lincRNA
  ENST00000539975 SNHG1-005 62852020-62855236 lincRNA
  ENST00000540725 SNHG1-001 62851988-62855746 lincRNA
  ENST00000540865 SNHG1-017 62853073-62855488 retained_intron
  ENST00000540904 SNHG1-010 62854680-62855488 retained_intron
  ENST00000541416 SNHG1-008 62854080-62855812 retained_intron
  ENST00000541578 SNHG1-021 62852297-62855488 lincRNA
  ENST00000541615 SNHG1-020 62852290-62855488 lincRNA
  ENST00000542112 SNHG1-007 62852258-62855914 lincRNA
  ENST00000544550 SNHG1-018 62852832-62855488 retained_intron
  ENST00000544983 SNHG1-009 62854682-62855758 retained_intron
  ENST00000545308 SNHG1-012 62854442-62855488 retained_intron
  ENST00000545440 SNHG1-014 62852252-62855488 lincRNA
  ENST00000545688 SNHG1-015 62852749-62855460 retained_intron
  ENST00000545920 SNHG1-024 62853072-62854342 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000535076ENST00000537068ENST00000537869ENST00000537925ENST00000538654ENST00000539921ENST00000539975ENST00000540725ENST00000540904ENST00000541416ENST00000541578ENST00000542112ENST00000544550ENST00000544983ENST00000545440ENST00000545920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000535076 3.523±0.00 21.583±0.00 N/A 2.538±0.00 2.303±0.00 N/A N/A 4.015±0.00 1.809±0.00 N/A 1.587±0.00 8.255±0.00 2.099±0.08 4.342±1.96
ENST00000537068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.646±0.00 N/A N/A N/A
ENST00000537869 1.297±0.00 N/A N/A 2.150±0.00 5.493±0.00 5.457±0.00 N/A 3.721±0.00 2.386±0.00 9.417±0.00 N/A 7.019±0.00 1.943±0.00 5.030±0.00
ENST00000537925 N/A N/A N/A N/A N/A N/A 0.745±0.00 N/A 1.169±0.18 N/A N/A N/A N/A N/A
ENST00000538654 N/A 3.760±0.00 0.335±0.00 0.733±0.00 3.593±0.00 3.575±0.00 0.710±0.00 0.761±0.38 0.605±0.00 1.482±0.58 N/A 4.884±2.59 N/A 1.646±0.00
ENST00000539921 N/A N/A N/A 2.513±0.00 N/A 3.794±0.00 2.383±0.00 4.021±0.00 N/A 5.910±0.00 N/A 25.736±14.12 5.498±0.08 2.783±0.00
ENST00000539975 N/A N/A N/A N/A 2.925±0.00 N/A N/A N/A N/A N/A 2.348±0.00 N/A 4.515±0.00 N/A
ENST00000540725 1.253±0.00 N/A N/A 2.459±0.00 1.701±0.00 3.124±0.00 N/A N/A N/A 4.925±4.19 N/A N/A 2.561±0.04 1.513±0.00
ENST00000540904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.739±0.00 N/A N/A
ENST00000541416 N/A N/A 0.792±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.836±0.00 N/A N/A N/A
ENST00000542112 1.417±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544550 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.705±0.00 N/A N/A N/A N/A
ENST00000544983 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.091±0.00 N/A N/A N/A N/A
ENST00000545440 N/A N/A N/A 3.485±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545920 N/A N/A 0.857±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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