C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 253
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000256771 ZNF253 9606 + 19:19865886-19894674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355650 ZNF253-002 19865907-19893648 protein_coding
  ENST00000589668 ZNF253-003 19865918-19878695 retained_intron
  ENST00000589717 ZNF253-001 19865905-19894674 protein_coding
  ENST00000592725 ZNF253-004 19865886-19892083 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355650ENST00000589668ENST00000589717ENST00000592725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355650 0.300±0.00 0.788±0.00 0.471±0.00 0.622±0.00 N/A 0.355±0.07 0.594±0.00 0.784±0.00 0.375±0.00 0.412±0.06 0.245±0.00 0.628±0.26 0.425±0.07 0.288±0.00
ENST00000589668 N/A N/A N/A N/A N/A N/A 3.913±0.00 N/A N/A N/A 7.942±0.00 N/A N/A N/A
ENST00000589717 0.514±0.00 0.470±0.00 0.785±0.00 0.678±0.30 0.604±0.21 0.587±0.39 0.348±0.12 1.306±0.15 0.669±0.53 1.331±0.00 0.282±0.03 0.472±0.07 0.326±0.11 0.452±0.05
ENST00000592725 N/A N/A 0.817±0.00 1.791±0.00 N/A N/A N/A N/A 1.220±0.00 1.491±0.00 0.824±0.00 1.853±0.00 0.756±0.00 1.508±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064B CIL_00064B_0001 CGP 19:19785839-19894674

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000052909 Gm9894 predicted gene 9894 protein_coding Mus_musculus
ENSMUSG00000071281 Zfp65 zinc finger protein 65 protein_coding Mus_musculus
ENSMUSG00000074824 Rslcan18 regulator of sex-limitation candidate 18 protein_coding Mus_musculus
ENSMUSG00000090659 Zfp493 zinc finger protein 493 protein_coding Mus_musculus

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