C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: canopy FGF signaling regulator 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000257727 CNPY2 9606 - 12:56309842-56316336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273308 CNPY2-001 56310428-56316336 protein_coding
  ENST00000546388 CNPY2-004 56314650-56315897 retained_intron
  ENST00000546466 CNPY2-011 56309842-56311312 nonsense_mediated_decay
  ENST00000546937 CNPY2-003 56310428-56311929 retained_intron
  ENST00000547570 CNPY2-006 56314490-56315750 retained_intron
  ENST00000548013 CNPY2-002 56314490-56316047 retained_intron
  ENST00000551276 CNPY2-009 56312523-56315206 processed_transcript
  ENST00000551286 CNPY2-007 56311001-56315930 protein_coding
  ENST00000551475 CNPY2-008 56310958-56316050 protein_coding
  ENST00000551720 CNPY2-012 56311338-56316119 processed_transcript
  ENST00000553164 CNPY2-005 56314508-56316000 retained_intron
  ENST00000553191 CNPY2-010 56310433-56314968 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaENST00000273308ENST00000551286ENST00000553191
Transcript ID Brain Liver Ovary Placenta
ENST00000273308 18.744±0.00 N/A 84.013±13.61 68.633±17.41
ENST00000551286 N/A N/A N/A 51.604±0.00
ENST00000553191 N/A 47.993±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005887 TAS integral component of plasma membrane
GO:0010629 ISS negative regulation of gene expression
GO:0010988 ISS regulation of low-density lipoprotein particle clearance
GO:0045716 ISS positive regulation of low-density lipoprotein particle receptor biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007207 cnpy2 canopy 2 protein_coding Danio_rerio
ENSMUSG00000025381 Cnpy2 canopy 2 homolog (zebrafish) protein_coding Mus_musculus

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