C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, beta 3 class III
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000258947 TUBB3 9606 + 16:89921392-89938761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315491 TUBB3-001 89923279-89936097 protein_coding
  ENST00000553656 TUBB3-007 89923338-89934798 nonsense_mediated_decay
  ENST00000553967 TUBB3-011 89923366-89934001 protein_coding
  ENST00000554116 TUBB3-008 89923345-89932108 processed_transcript
  ENST00000554336 TUBB3-010 89923354-89934301 protein_coding
  ENST00000554444 TUBB3-002 89921851-89936091 protein_coding
  ENST00000554927 TUBB3-009 89923345-89933017 retained_intron
  ENST00000555576 TUBB3-005 89923345-89938761 protein_coding
  ENST00000555609 TUBB3-013 89923359-89936010 nonsense_mediated_decay
  ENST00000555810 TUBB3-004 89921392-89935235 protein_coding
  ENST00000556536 TUBB3-012 89923342-89935070 nonsense_mediated_decay
  ENST00000556565 TUBB3-003 89921916-89934806 protein_coding
  ENST00000557262 TUBB3-006 89923345-89934138 nonsense_mediated_decay
  ENST00000557490 TUBB3-014 89923345-89934971 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonTestisENST00000315491ENST00000555810
Transcript ID Brain Breast Colon Testis
ENST00000315491 79.507±48.46 4.736±0.00 18.848±0.00 53.133±0.00
ENST00000555810 113.426±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005N CIL_00005N_0001 CGP 16:89921392-89968060

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0007067 IEA mitotic nuclear division
GO:0007411 IMP axon guidance
GO:0015630 IEA microtubule cytoskeleton
GO:0030182 IEA neuron differentiation
GO:0030424 IEA axon
GO:0030425 ISS dendrite
GO:0042277 IEA peptide binding
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000062380 Tubb3 tubulin, beta 3 class III protein_coding Mus_musculus

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