C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hepatocellular carcinoma associated transcript 5 (non-protein coding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000260880 HCCAT5 9606 + 16:73092349-73093774 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000569990 HCCAT5-001 73092349-73093774 lincRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLungMusclePlacentaTestisENST00000569990
Transcript ID Adrenal Brain Colon Lung Muscle Placenta Testis
ENST00000569990 0.076±0.00 0.044±0.00 0.037±0.00 0.256±0.00 0.167±0.00 0.035±0.00 0.045±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KL CIL_0007KL_0001 UCNEbase 16:72373211-73946064
CIL_0008IG CIL_0008IG_0001 VISTA 16:72505663-73107225
CIL_0008IF CIL_0008IF_0001 VISTA 16:72553694-73154614
CIL_0008I9 CIL_0008I9_0001 VISTA 16:72595979-73197389
CIL_0008I8 CIL_0008I8_0001 VISTA 16:72647001-73248646
CIL_0008FF CIL_0008FF_0001 VISTA 16:73018413-73620686
CIL_0008U6 CIL_0008U6_0001 VISTA 16:73028910-73630393

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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