C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: survival of motor neuron 2, centromeric
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000277773 SMN2 9606 - CHR_HSCHR5_2_CTG1_1:69673667-69702549 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000611442 SMN2-206 69675603-69702501 protein_coding
  ENST00000611906 SMN2-009 69675262-69684888 retained_intron
  ENST00000612446 SMN2-003 69674593-69702530 nonsense_mediated_decay
  ENST00000617648 SMN2-006 69682853-69685098 nonsense_mediated_decay
  ENST00000618251 SMN2-001 69674597-69702531 protein_coding
  ENST00000618661 SMN2-207 69675603-69702501 protein_coding
  ENST00000619658 SMN2-002 69675483-69702549 protein_coding
  ENST00000620650 SMN2-004 69673667-69681519 nonsense_mediated_decay
  ENST00000624213 SMN2-014 69681430-69682950 retained_intron
  ENST00000624254 SMN2-011 69681334-69684888 retained_intron
  ENST00000624634 SMN2-007 69674597-69702523 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 IEA mRNA processing
GO:0007399 IEA nervous system development
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0042307 IDA positive regulation of protein import into nucleus
GO:0042802 IPI identical protein binding
GO:0097504 IDA Gemini of coiled bodies

Homologs

No Homologs available.

Loading