C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22 (organic cation transporter), member 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000154 Slc22a18 10090 + 7:143473721-143499334 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052348 Slc22a18-001 143473736-143499334 protein_coding
  ENSMUST00000105917 Slc22a18-002 143475101-143499325 protein_coding
  ENSMUST00000141988 Slc22a18-006 143473805-143497052 nonsense_mediated_decay
  ENSMUST00000145943 Slc22a18-004 143473780-143499334 nonsense_mediated_decay
  ENSMUST00000146983 Slc22a18-003 143473721-143476309 processed_transcript
  ENSMUST00000150791 Slc22a18-005 143473768-143497051 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052348ENSMUST00000105917ENSMUST00000141988ENSMUST00000145943ENSMUST00000146983ENSMUST00000150791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052348 6.870±0.93 5.547±0.98 8.654±0.30 0.196±0.04 8.394±2.97 93.014±22.37 0.663±0.09 87.574±13.22 69.252±62.25 11.087±0.89 0.130±0.00 6.696±3.28 12.353±6.48 8.830±4.12
ENSMUST00000105917 N/A N/A N/A N/A N/A 23.819±3.75 N/A 371.858±52.72 5.303±6.06 N/A N/A N/A 12.426±0.29 N/A
ENSMUST00000141988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.04 N/A N/A N/A
ENSMUST00000145943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.10 0.226±0.00 14.924±4.02 0.490±0.00
ENSMUST00000146983 N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A
ENSMUST00000150791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.225±0.00 1.972±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A3 CIL_0008A3_0002 VISTA 7:142895498-143499796
CIL_000489 CIL_000489_0002 CGP 7:143473721-143502541

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005635 IEA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005887 ISS integral component of plasma membrane
GO:0006820 TAS anion transport
GO:0006855 IEA drug transmembrane transport
GO:0008514 TAS organic anion transmembrane transporter activity
GO:0015238 IEA drug transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015711 TAS organic anion transport
GO:0015893 IEA drug transport
GO:0016020 IEA membrane
GO:0016324 IEA apical plasma membrane
GO:0031625 IEA ubiquitin protein ligase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052271 slc22a18 solute carrier family 22 (organic cation transporter), member 18 protein_coding Danio_rerio
ENSG00000110628 SLC22A18 solute carrier family 22, member 18 protein_coding Homo_sapiens

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