C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: armadillo repeat gene deleted in velo-cardio-facial syndrome
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000325 Arvcf 10090 + 16:18348182-18407076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090103 Arvcf-201 18348274-18407072 protein_coding
  ENSMUST00000115610 Arvcf-005 18392589-18406256 protein_coding
  ENSMUST00000115612 Arvcf-002 18380783-18406747 protein_coding
  ENSMUST00000115613 Arvcf-001 18348274-18407076 protein_coding
  ENSMUST00000115614 Arvcf-003 18348182-18407076 protein_coding
  ENSMUST00000126183 Arvcf-008 18399088-18400640 retained_intron
  ENSMUST00000150253 Arvcf-004 18392588-18407076 nonsense_mediated_decay
  ENSMUST00000150484 Arvcf-007 18401132-18403431 processed_transcript
  ENSMUST00000152132 Arvcf-009 18403449-18404458 retained_intron
  ENSMUST00000155548 Arvcf-006 18397724-18399004 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLungMuscleOvaryPlacentaTestisENSMUST00000090103ENSMUST00000115610ENSMUST00000115612ENSMUST00000115614
Transcript ID Adrenal Brain Colon Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000090103 N/A 9.571±1.59 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115610 19.677±2.63 23.638±0.08 6.562±1.15 35.272±2.87 18.512±2.11 2.719±0.34 11.426±2.60 8.756±3.91 1.413±0.68
ENSMUST00000115612 N/A N/A N/A N/A N/A N/A 3.330±0.00 9.363±1.65 1.255±0.22
ENSMUST00000115614 N/A 10.949±0.86 N/A N/A N/A N/A N/A 6.679±2.50 0.666±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0016337 IEA single organismal cell-cell adhesion
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061688 arvcfb armadillo repeat gene deleted in velocardiofacial syndrome b protein_coding Danio_rerio
ENSDARG00000074329 arvcfa armadillo repeat gene deleted in velocardiofacial syndrome a protein_coding Danio_rerio
ENSG00000099889 ARVCF armadillo repeat gene deleted in velocardiofacial syndrome protein_coding Homo_sapiens

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