C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA 3'-terminal phosphate cyclase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000339 Rtca 10090 - 3:116488963-116508208 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000348 Rtca-001 116488963-116508208 protein_coding
  ENSMUST00000124486 Rtca-005 116489240-116495965 retained_intron
  ENSMUST00000140677 Rtca-003 116494151-116508024 nonsense_mediated_decay
  ENSMUST00000143425 Rtca-004 116499546-116508133 nonsense_mediated_decay
  ENSMUST00000153005 Rtca-002 116495691-116508065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000348ENSMUST00000124486ENSMUST00000140677ENSMUST00000143425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000348 2.765±1.12 3.163±1.46 7.756±1.02 14.997±3.83 3.580±0.82 5.543±1.13 2.631±0.64 3.594±1.94 4.444±2.87 4.410±1.14 6.568±0.72 4.982±1.92 10.079±1.80 17.672±6.98
ENSMUST00000124486 N/A N/A N/A 26.572±0.00 N/A N/A N/A N/A N/A N/A N/A 7.885±0.27 10.737±3.40 25.433±0.00
ENSMUST00000140677 N/A N/A N/A 10.067±0.00 N/A N/A 2.390±0.36 N/A 1.456±0.00 N/A 3.125±0.39 N/A 6.369±0.00 20.947±2.58
ENSMUST00000143425 6.399±1.67 24.391±8.72 N/A N/A 9.942±3.57 18.383±1.99 2.746±0.27 7.439±1.53 3.055±0.42 7.250±1.66 N/A 16.532±3.63 6.537±0.00 22.541±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ER CIL_0007ER_0002 CGP 3:116272553-116508208
CIL_0007ES CIL_0007ES_0002 CGP 3:116488963-116549976

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003963 IEA RNA-3'-phosphate cyclase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002215 rtca RNA 3'-terminal phosphate cyclase protein_coding Danio_rerio
ENSG00000137996 RTCA RNA 3'-terminal phosphate cyclase protein_coding Homo_sapiens

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