C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rad and gem related GTP binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000359 Rem1 10090 + 2:152626951-152635198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000369 Rem1-001 152626951-152635194 protein_coding
  ENSMUST00000139370 Rem1-003 152632967-152635198 retained_intron
  ENSMUST00000150913 Rem1-002 152626953-152628303 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000369ENSMUST00000139370ENSMUST00000150913
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000369 6.946±1.31 5.984±1.47 4.945±0.20 0.195±0.13 4.897±1.11 5.122±0.39 1.953±0.41 4.349±0.77 0.355±0.24 5.251±0.97 0.900±0.24 7.581±2.81 0.586±0.43 0.580±0.16
ENSMUST00000139370 N/A 1.396±0.55 N/A 0.076±0.00 1.569±0.31 0.956±0.04 N/A 1.181±0.01 0.081±0.00 1.765±0.12 0.225±0.02 3.263±1.06 0.339±0.00 0.101±0.00
ENSMUST00000150913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.218±0.73 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A7 CIL_0001A7_0002 CGP 2:152622356-152635198
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005516 IEA calmodulin binding
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020544 rem1 rad and gem related GTP binding protein 1 protein_coding Danio_rerio
ENSG00000088320 REM1 RAS (RAD and GEM)-like GTP-binding 1 protein_coding Homo_sapiens

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