C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C1D nuclear receptor co-repressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000581 C1d 10090 + 11:17257579-17269176 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000594 C1d-001 17257594-17269176 protein_coding
  ENSMUST00000130330 C1d-005 17263621-17266560 processed_transcript
  ENSMUST00000131227 C1d-003 17257579-17262910 processed_transcript
  ENSMUST00000135568 C1d-004 17257592-17264294 processed_transcript
  ENSMUST00000156784 C1d-002 17257688-17266624 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000594ENSMUST00000131227ENSMUST00000135568ENSMUST00000156784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000594 1.723±0.37 0.865±0.41 8.989±1.99 9.795±4.03 1.016±0.39 0.903±0.39 1.512±0.45 2.360±0.83 4.967±3.06 1.458±0.72 3.264±1.74 2.486±2.76 4.378±1.11 0.418±0.05
ENSMUST00000131227 9.042±1.26 3.375±1.07 N/A N/A 6.390±3.35 7.618±1.66 12.831±1.53 20.723±2.16 18.609±5.82 6.411±1.79 N/A 2.562±1.41 33.005±4.10 5.028±2.13
ENSMUST00000135568 3.325±0.44 N/A N/A N/A 2.197±0.69 1.054±0.00 1.775±0.00 3.005±0.18 N/A 1.876±0.60 N/A 1.215±0.32 N/A N/A
ENSMUST00000156784 1.606±0.40 N/A N/A 29.088±0.00 0.727±0.24 1.028±0.31 N/A 2.587±0.00 2.050±0.05 N/A N/A 10.169±19.39 34.010±24.10 6.392±4.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I2 CIL_0008I2_0002 VISTA 11:16884831-17492556
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000460 IEA maturation of 5.8S rRNA
GO:0003677 IDA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0017053 IDA transcriptional repressor complex
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021112 c1d C1D nuclear receptor co-repressor protein_coding Danio_rerio
ENSG00000197223 C1D C1D nuclear receptor corepressor protein_coding Homo_sapiens

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