C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DNA (cytosine-5-)-methyltransferase 3-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000730 Dnmt3l 10090 + 10:78041947-78063622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000746 Dnmt3l-003 78049842-78063622 protein_coding
  ENSMUST00000123940 Dnmt3l-006 78055335-78063615 protein_coding
  ENSMUST00000131825 Dnmt3l-004 78055335-78063615 protein_coding
  ENSMUST00000135316 Dnmt3l-007 78041947-78045903 processed_transcript
  ENSMUST00000138785 Dnmt3l-001 78042287-78063622 protein_coding
  ENSMUST00000139539 Dnmt3l-005 78055335-78063615 protein_coding
  ENSMUST00000144446 Dnmt3l-008 78054835-78057368 retained_intron
  ENSMUST00000151242 Dnmt3l-002 78049959-78063616 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000746ENSMUST00000123940ENSMUST00000131825ENSMUST00000138785ENSMUST00000139539ENSMUST00000144446ENSMUST00000151242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.987±0.00 1.530±1.30 N/A
ENSMUST00000123940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.965±0.33
ENSMUST00000131825 0.522±0.00 3.066±0.00 26.161±4.51 N/A 0.793±0.53 0.506±0.00 0.057±0.03 0.114±0.02 0.040±0.00 N/A 0.048±0.00 1.107±0.00 N/A N/A
ENSMUST00000138785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.254±0.64 N/A N/A
ENSMUST00000139539 N/A N/A N/A N/A 1.343±0.00 0.539±0.11 N/A N/A N/A 0.153±0.00 N/A N/A N/A 3.324±0.73
ENSMUST00000144446 N/A N/A N/A 0.119±0.00 2.151±0.00 N/A 0.207±0.07 0.347±0.00 0.077±0.04 0.440±0.05 0.101±0.00 N/A N/A N/A
ENSMUST00000151242 N/A N/A N/A N/A N/A N/A 0.044±0.02 0.110±0.00 N/A 0.162±0.00 0.037±0.00 0.505±0.19 6.386±7.20 0.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066U CIL_00066U_0002 CGP 10:78041947-78079525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0001701 IMP in utero embryonic development
GO:0001890 IMP placenta development
GO:0005515 IPI protein binding
GO:0005720 IDA nuclear heterochromatin
GO:0005737 IDA cytoplasm
GO:0008047 IDA enzyme activator activity
GO:0019899 ISS enzyme binding
GO:0032259 IMP methylation
GO:0043085 IDA positive regulation of catalytic activity
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0060718 IMP chorionic trophoblast cell differentiation
GO:0071514 IMP genetic imprinting

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000142182 DNMT3L DNA (cytosine-5-)-methyltransferase 3-like protein_coding Homo_sapiens
ENSG00000279493 CH507-9B2.2 protein_coding Homo_sapiens

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