C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication protein A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000751 Rpa1 10090 - 11:75298166-75348324 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000767 Rpa1-002 75300350-75348310 protein_coding
  ENSMUST00000092907 Rpa1-001 75298166-75348324 protein_coding
  ENSMUST00000135770 Rpa1-005 75301305-75342188 processed_transcript
  ENSMUST00000149365 Rpa1-003 75341978-75348293 processed_transcript
  ENSMUST00000154894 Rpa1-004 75316040-75348295 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000767ENSMUST00000092907ENSMUST00000135770ENSMUST00000154894
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000767 8.318±2.81 9.223±2.53 17.050±6.09 7.904±2.25 8.688±2.91 8.160±1.37 5.845±1.17 7.086±1.37 12.237±8.07 7.050±1.47 13.980±2.14 11.242±4.59 16.534±11.51 24.175±3.18
ENSMUST00000092907 N/A 0.858±0.27 N/A N/A 0.804±0.00 N/A 0.724±0.00 0.854±0.11 N/A 0.732±0.00 N/A 1.218±0.10 N/A N/A
ENSMUST00000135770 N/A N/A N/A 19.679±0.00 4.125±0.00 N/A N/A N/A N/A N/A N/A 32.198±0.00 37.698±28.63 51.263±0.00
ENSMUST00000154894 5.012±1.06 N/A 13.840±0.30 11.218±0.99 N/A N/A N/A 4.333±0.00 29.041±13.09 3.419±0.00 N/A 5.711±1.88 10.651±1.09 18.563±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435
CIL_00037G CIL_00037G_0002 CGP 11:75193783-75348324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000800 IDA lateral element
GO:0001673 IDA male germ cell nucleus
GO:0001701 IMP in utero embryonic development
GO:0003682 IDA chromatin binding
GO:0003684 IEA damaged DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IEA DNA replication factor A complex
GO:0005737 IEA cytoplasm
GO:0006260 IEA DNA replication
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006298 IEA mismatch repair
GO:0007126 IDA meiotic nuclear division
GO:0008284 IMP positive regulation of cell proliferation
GO:0015629 IEA actin cytoskeleton
GO:0016605 IEA PML body
GO:0030097 IMP hemopoiesis
GO:0046872 IEA metal ion binding
GO:0048873 IMP homeostasis of number of cells within a tissue
GO:0051276 IMP chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003938 rpa1 replication protein A1 protein_coding Danio_rerio
ENSG00000132383 RPA1 replication protein A1, 70kDa protein_coding Homo_sapiens

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