C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, gamma complex associated protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000759 Tubgcp3 10090 - 8:12614277-12672248 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000776 Tubgcp3-001 12614277-12672248 protein_coding
  ENSMUST00000164611 Tubgcp3-007 12615167-12637955 retained_intron
  ENSMUST00000164774 Tubgcp3-003 12614277-12672099 nonsense_mediated_decay
  ENSMUST00000164861 Tubgcp3-005 12649911-12655902 retained_intron
  ENSMUST00000164971 Tubgcp3-004 12621799-12657620 retained_intron
  ENSMUST00000165321 Tubgcp3-009 12654253-12657634 nonsense_mediated_decay
  ENSMUST00000167547 Tubgcp3-002 12630410-12672123 retained_intron
  ENSMUST00000168657 Tubgcp3-010 12614279-12637982 retained_intron
  ENSMUST00000172056 Tubgcp3-008 12654288-12671959 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000776ENSMUST00000164611ENSMUST00000164774ENSMUST00000164971ENSMUST00000167547ENSMUST00000168657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000776 3.611±0.87 N/A 4.494±1.25 5.635±2.03 3.335±1.27 3.592±0.00 2.649±0.45 2.417±0.88 8.729±4.61 3.953±1.26 2.149±0.29 8.859±2.07 5.921±2.63 2.011±0.23
ENSMUST00000164611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.364±0.00
ENSMUST00000164774 6.298±2.48 13.514±1.40 3.442±0.67 3.270±0.38 10.255±4.39 9.668±2.01 2.404±0.65 3.196±0.97 2.388±0.87 11.643±1.93 N/A 15.580±2.89 2.735±0.22 2.948±0.07
ENSMUST00000164971 N/A N/A N/A N/A N/A N/A N/A 1.838±0.07 N/A N/A N/A N/A N/A N/A
ENSMUST00000167547 N/A 4.412±0.08 N/A N/A N/A N/A N/A N/A 3.379±0.05 N/A 0.394±0.00 3.628±0.00 N/A N/A
ENSMUST00000168657 6.243±1.22 8.718±0.49 7.307±1.05 7.474±1.35 5.089±1.39 6.295±0.14 2.259±0.53 4.467±0.89 7.789±5.81 6.220±0.74 1.140±0.15 9.824±2.65 6.197±3.50 2.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SC CIL_0008SC_0002 VISTA 8:12162372-12763356
CIL_00014D CIL_00014D_0002 CGP 8:12573049-12672248

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005814 IEA centriole
GO:0005815 IEA microtubule organizing center
GO:0005827 IEA polar microtubule
GO:0007020 IEA microtubule nucleation
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0043015 IEA gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029133 tubgcp3 tubulin, gamma complex associated protein 3 protein_coding Danio_rerio
ENSG00000126216 TUBGCP3 tubulin, gamma complex associated protein 3 protein_coding Homo_sapiens

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