C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOL1/NOP2/Sun domain family, member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000916 Nsun5 10090 + 5:135369953-135376805 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000940 Nsun5-001 135369953-135376798 protein_coding
  ENSMUST00000124453 Nsun5-006 135374179-135376034 retained_intron
  ENSMUST00000126454 Nsun5-005 135371059-135371808 retained_intron
  ENSMUST00000127746 Nsun5-003 135369970-135371403 processed_transcript
  ENSMUST00000131863 Nsun5-002 135373652-135376805 processed_transcript
  ENSMUST00000141867 Nsun5-004 135370927-135374084 retained_intron
  ENSMUST00000170342 Nsun5-007 135369975-135374204 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000000940ENSMUST00000124453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000000940 5.129±0.46 9.518±0.58 3.568±0.32 6.696±0.00 6.773±0.96 6.414±0.47 4.433±0.19 4.047±1.19 4.795±1.68 6.145±0.85 1.716±0.13 10.772±1.80 4.243±0.27
ENSMUST00000124453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.826±0.00 10.796±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UT CIL_0005UT_0002 CGP 5:135353295-135376805
CIL_0005SR CIL_0005SR_0002 CGP 5:135369953-135394546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043209 nsun5 NOP2/Sun domain family, member 5 protein_coding Danio_rerio
ENSG00000130305 NSUN5 NOP2/Sun domain family, member 5 protein_coding Homo_sapiens

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