C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000938 Hoxa10 10090 - 6:52231197-52240854 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121043 Hoxa10-004 52231922-52240854 protein_coding
  ENSMUST00000125581 Hoxa10-001 52231197-52234939 protein_coding
  ENSMUST00000126402 Hoxa10-002 52231199-52233324 processed_transcript
  ENSMUST00000142611 Hoxa10-003 52232082-52240795 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121043ENSMUST00000125581ENSMUST00000126402ENSMUST00000142611
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121043 17.549±14.13 N/A 18.497±3.98 0.021±0.00 0.595±0.19 8.159±1.07 9.498±0.72 0.030±0.02 0.096±0.00 2.764±0.73 N/A 1.456±0.61 0.322±0.27
ENSMUST00000125581 18.042±17.06 0.104±0.02 14.089±1.20 0.082±0.00 1.794±1.02 6.713±2.29 4.628±1.16 0.027±0.03 0.050±0.00 1.784±0.43 5.162±2.54 0.922±0.56 0.346±0.05
ENSMUST00000126402 2.976±0.00 0.101±0.03 12.677±1.15 N/A 0.404±0.00 N/A 4.007±0.00 0.023±0.01 N/A 3.117±0.48 0.493±0.30 1.692±1.38 0.064±0.04
ENSMUST00000142611 17.507±15.29 N/A N/A 0.031±0.00 1.181±0.00 10.777±1.74 6.783±0.00 0.071±0.05 0.125±0.00 N/A 0.142±0.00 N/A 0.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IGI skeletal system development
GO:0003677 TAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030326 IGI embryonic limb morphogenesis
GO:0042826 IEA histone deacetylase binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060065 IGI uterus development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031337 hoxa10b homeo box A10b protein_coding Danio_rerio
ENSG00000253293 HOXA10 homeobox A10 protein_coding Homo_sapiens

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