C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000942 Hoxa4 10090 - 6:52189671-52191753 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000101395 Hoxa4-001 52189671-52191753 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMusclePlacentaTestisENSMUST00000101395
Transcript ID Brain Breast Heart Liver Lung Muscle Placenta Testis
ENSMUST00000101395 4.624±3.86 1.949±0.00 0.456±0.04 0.284±0.16 3.255±0.60 2.774±0.37 0.504±0.12 19.848±8.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PB CIL_0003PB_0002 CGP 6:52189671-52204587

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000197576 HOXA4 homeobox A4 protein_coding Homo_sapiens

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