C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoic acid receptor, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001288 Rarg 10090 - 15:102234938-102257517 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043172 Rarg-001 102234938-102257517 protein_coding
  ENSMUST00000063339 Rarg-002 102234940-102246500 protein_coding
  ENSMUST00000124224 Rarg-004 102241943-102245231 processed_transcript
  ENSMUST00000130204 Rarg-005 102241939-102243589 processed_transcript
  ENSMUST00000135466 Rarg-006 102239989-102257349 protein_coding
  ENSMUST00000155563 Rarg-003 102241943-102250346 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043172ENSMUST00000063339ENSMUST00000135466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043172 5.073±1.72 3.417±0.48 14.063±2.13 0.940±0.00 8.489±0.52 3.534±0.33 1.205±0.18 2.928±1.10 0.414±0.14 8.863±3.09 0.725±0.23 5.244±1.27 0.986±0.52 0.309±0.10
ENSMUST00000063339 17.452±2.61 9.936±2.84 9.336±2.98 2.562±0.47 20.762±3.69 10.944±2.83 5.838±2.45 6.139±0.80 1.928±0.46 20.451±9.10 2.889±0.65 17.826±4.68 3.040±1.52 1.074±0.24
ENSMUST00000135466 N/A N/A N/A 7.072±0.00 N/A N/A N/A N/A N/A N/A N/A 35.042±0.00 10.993±4.50 5.192±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060L CIL_00060L_0002 CGP 15:102215995-102257517
CIL_00060M CIL_00060M_0002 CGP 15:102234938-102281744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001843 IGI neural tube closure
GO:0002063 IMP chondrocyte development
GO:0002068 IGI glandular epithelial cell development
GO:0003406 IGI retinal pigment epithelium development
GO:0003417 IGI growth plate cartilage development
GO:0003430 IMP growth plate cartilage chondrocyte growth
GO:0003677 IC DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008284 IGI positive regulation of cell proliferation
GO:0008285 IGI negative regulation of cell proliferation
GO:0009952 IGI anterior/posterior pattern specification
GO:0010468 IGI regulation of gene expression
GO:0010628 IDA positive regulation of gene expression
GO:0031076 IGI embryonic camera-type eye development
GO:0031641 IEA regulation of myelination
GO:0032331 IMP negative regulation of chondrocyte differentiation
GO:0032526 IEA response to retinoic acid
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0035264 IGI multicellular organism growth
GO:0043010 IGI camera-type eye development
GO:0043065 IGI positive regulation of apoptotic process
GO:0043066 IGI negative regulation of apoptotic process
GO:0043068 IGI positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045596 IMP negative regulation of cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IMP retinoid X receptor binding
GO:0048048 IGI embryonic eye morphogenesis
GO:0048384 IMP retinoic acid receptor signaling pathway
GO:0048608 IMP reproductive structure development
GO:0048732 IMP gland development
GO:0060041 IGI retina development in camera-type eye
GO:0060173 IGI:IMP limb development
GO:0060324 IGI face development
GO:0060348 IGI:IMP bone development
GO:0060349 IGI bone morphogenesis
GO:0060429 IMP epithelium development
GO:0060534 IMP trachea cartilage development
GO:0060740 IMP prostate gland epithelium morphogenesis
GO:0061037 IMP negative regulation of cartilage development
GO:0070384 IMP Harderian gland development
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034117 rarga retinoic acid receptor gamma a protein_coding Danio_rerio
ENSDARG00000054003 rargb retinoic acid receptor, gamma b protein_coding Danio_rerio
ENSG00000172819 RARG retinoic acid receptor, gamma protein_coding Homo_sapiens

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