C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chaperonin containing Tcp1, subunit 3 (gamma)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001416 Cct3 10090 + 3:88297116-88321767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001452 Cct3-001 88297116-88321767 protein_coding
  ENSMUST00000163735 Cct3-007 88302838-88320650 protein_coding
  ENSMUST00000164122 Cct3-009 88320995-88321764 retained_intron
  ENSMUST00000164166 Cct3-006 88297174-88321766 protein_coding
  ENSMUST00000164783 Cct3-003 88297126-88314407 retained_intron
  ENSMUST00000167000 Cct3-002 88297123-88321507 retained_intron
  ENSMUST00000167718 Cct3-004 88297153-88321507 retained_intron
  ENSMUST00000168062 Cct3-005 88297188-88321507 protein_coding
  ENSMUST00000168971 Cct3-008 88321048-88321765 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001452ENSMUST00000163735ENSMUST00000164122ENSMUST00000164166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001452 52.385±13.86 23.115±3.53 53.510±8.62 75.072±28.63 35.072±10.30 31.434±3.40 33.489±4.71 34.567±1.60 64.621±38.78 29.464±1.49 25.536±1.87 79.479±15.74 115.291±51.63 113.691±11.67
ENSMUST00000163735 N/A 9.744±1.64 N/A 66.397±0.00 N/A N/A N/A N/A N/A N/A N/A 68.842±42.30 170.346±95.69 84.894±0.00
ENSMUST00000164122 N/A 20.812±4.18 N/A N/A 29.160±10.49 N/A 25.562±1.92 33.744±2.75 N/A N/A N/A N/A N/A N/A
ENSMUST00000164166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.713±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002199 IDA zona pellucida receptor complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005832 IDA chaperonin-containing T-complex
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0006457 IEA protein folding
GO:0007339 IDA binding of sperm to zona pellucida
GO:0044297 IDA cell body
GO:0044822 IEA poly(A) RNA binding
GO:0046931 IMP pore complex assembly
GO:0051082 IEA unfolded protein binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016173 cct3 chaperonin containing TCP1, subunit 3 (gamma) protein_coding Danio_rerio
ENSG00000163468 CCT3 chaperonin containing TCP1, subunit 3 (gamma) protein_coding Homo_sapiens

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