C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycosylated lysosomal membrane protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001418 0610031J06Rik 10090 + 3:88325023-88331313 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001454 0610031J06Rik-009 88325082-88328368 protein_coding
  ENSMUST00000131666 0610031J06Rik-004 88325072-88326467 nonsense_mediated_decay
  ENSMUST00000140039 0610031J06Rik-005 88326044-88328318 retained_intron
  ENSMUST00000152801 0610031J06Rik-002 88325060-88327587 retained_intron
  ENSMUST00000153716 0610031J06Rik-003 88325058-88326578 retained_intron
  ENSMUST00000154381 0610031J06Rik-006 88328073-88328581 protein_coding
  ENSMUST00000176425 0610031J06Rik-007 88325082-88328368 protein_coding
  ENSMUST00000176519 0610031J06Rik-008 88325082-88328363 protein_coding
  ENSMUST00000177005 0610031J06Rik-001 88325023-88331313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001454ENSMUST00000140039ENSMUST00000152801ENSMUST00000153716ENSMUST00000154381ENSMUST00000176425ENSMUST00000177005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001454 N/A 24.585±7.22 N/A 2.291±0.00 N/A N/A N/A N/A N/A N/A 3.723±0.60 19.145±8.70 37.907±15.23 N/A
ENSMUST00000140039 41.563±14.31 47.078±14.88 32.462±2.28 13.225±4.20 46.188±2.17 42.357±3.85 14.618±0.62 70.948±13.11 19.563±5.34 38.845±11.83 4.178±0.43 38.667±12.26 73.893±18.65 5.072±1.63
ENSMUST00000152801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00
ENSMUST00000153716 21.596±1.07 33.751±4.60 N/A N/A 30.613±0.00 40.678±7.09 8.356±1.77 36.203±2.65 23.507±2.48 32.860±4.59 N/A 42.897±3.00 38.654±1.49 3.273±0.06
ENSMUST00000154381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.391±1.67 50.453±2.82 129.903±26.67 N/A
ENSMUST00000176425 36.738±6.24 N/A 29.600±3.48 N/A 30.974±3.34 37.625±6.32 10.897±2.77 50.766±3.03 14.653±3.86 39.238±5.13 5.460±1.07 27.798±7.22 55.081±6.90 2.956±1.75
ENSMUST00000177005 12.305±2.15 24.606±4.44 6.746±0.25 2.214±1.05 14.035±4.27 18.955±2.17 3.346±0.72 17.248±3.47 6.163±2.34 15.049±0.54 0.766±0.10 14.238±5.07 10.917±3.04 1.153±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0005764 IDA lysosome
GO:0005829 IEA cytosol
GO:0016021 IDA integral component of membrane
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030522 IEA intracellular receptor signaling pathway
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059354 C19H1orf85 chromosome 1 open reading frame 85 protein_coding Danio_rerio
ENSG00000198715 C1orf85 chromosome 1 open reading frame 85 protein_coding Homo_sapiens

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