C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001819 Hoxd13 10090 + 2:74668310-74671599 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001872 Hoxd13-001 74668310-74671599 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungOvaryPlacentaTestisENSMUST00000001872
Transcript ID Adipose Bladder Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000001872 0.021±0.00 8.281±0.05 0.112±0.00 16.639±7.13 0.204±0.09 0.065±0.04 0.058±0.04 0.207±0.16 0.047±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001H7 CIL_0001H7_0002 CGP 2:74652991-74671599
CIL_0001HG CIL_0001HG_0002 CGP 2:74668310-74677705

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0009952 IMP anterior/posterior pattern specification
GO:0022612 IMP gland morphogenesis
GO:0030326 IMP embryonic limb morphogenesis
GO:0030539 IMP male genitalia development
GO:0035108 IMP limb morphogenesis
GO:0042127 IMP regulation of cell proliferation
GO:0042733 IGI embryonic digit morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048619 IEA embryonic hindgut morphogenesis
GO:0060527 IGI prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
GO:0060571 IMP morphogenesis of an epithelial fold
GO:0060602 IMP branch elongation of an epithelium
GO:0060687 IMP regulation of branching involved in prostate gland morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059256 hoxd13a homeo box D13a protein_coding Danio_rerio
ENSG00000128714 HOXD13 homeobox D13 protein_coding Homo_sapiens

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