C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin E1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002068 Ccne1 10090 - 7:38097984-38107534 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108023 Ccne1-001 38097984-38107534 protein_coding
  ENSMUST00000124979 Ccne1-002 38106279-38107502 retained_intron
  ENSMUST00000128785 Ccne1-004 38098668-38099501 retained_intron
  ENSMUST00000130329 Ccne1-003 38100658-38106908 protein_coding
  ENSMUST00000137097 Ccne1-005 38098811-38099369 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108023ENSMUST00000124979ENSMUST00000128785ENSMUST00000130329ENSMUST00000137097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108023 3.382±0.34 0.628±0.20 1.421±0.16 5.517±1.84 2.107±0.67 1.706±0.63 0.265±0.13 0.327±0.16 26.171±29.36 0.431±0.09 0.116±0.06 2.352±0.85 18.274±20.26 2.701±0.49
ENSMUST00000124979 N/A 7.113±2.42 N/A N/A 6.271±2.08 2.254±0.97 N/A N/A 0.211±0.09 0.391±0.06 N/A 4.552±1.08 N/A N/A
ENSMUST00000128785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A
ENSMUST00000130329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.04 N/A 1.428±0.00 N/A
ENSMUST00000137097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.07 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090S CIL_00090S_0002 VISTA 7:37596462-38197435
CIL_000834 CIL_000834_0002 VISTA 7:37604895-38205961
CIL_000835 CIL_000835_0002 VISTA 7:37670403-38271286
CIL_0008TZ CIL_0008TZ_0002 VISTA 7:37750392-38351469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000307 IPI cyclin-dependent protein kinase holoenzyme complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006270 IMP DNA replication initiation
GO:0006468 ISS protein phosphorylation
GO:0016055 IDA Wnt signaling pathway
GO:0016301 IDA kinase activity
GO:0016538 IDA cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 IPI protein kinase binding
GO:0045859 IDA regulation of protein kinase activity
GO:0051301 IEA cell division
GO:0051726 IDA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011133 ccne1 cyclin E1 protein_coding Danio_rerio
ENSG00000105173 CCNE1 cyclin E1 protein_coding Homo_sapiens

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