C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly-U binding splicing factor 60
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002524 Puf60 10090 - 15:76070184-76080946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002599 Puf60-201 76070184-76080946 protein_coding
  ENSMUST00000100527 Puf60-202 76070184-76080946 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002599ENSMUST00000100527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002599 45.349±6.81 131.787±11.48 49.945±6.36 60.847±15.57 54.548±24.61 70.438±6.99 19.840±2.47 41.081±3.01 45.797±11.30 56.865±12.35 8.171±3.13 99.096±27.45 60.915±16.01 35.393±13.49
ENSMUST00000100527 21.360±1.57 51.342±5.57 14.589±1.14 39.359±8.33 29.259±2.87 25.625±3.75 15.702±2.29 22.405±1.93 14.452±3.03 28.281±3.02 11.415±2.99 36.566±13.35 28.338±1.13 30.684±13.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0002GT CIL_0002GT_0002 CGP 15:76047158-76080946
CIL_0006FY CIL_0006FY_0003 CGP 15:76070184-76090013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001241 puf60b poly-U binding splicing factor b protein_coding Danio_rerio
ENSDARG00000032175 puf60a poly-U binding splicing factor a protein_coding Danio_rerio
ENSG00000179950 PUF60 poly-U binding splicing factor 60KDa protein_coding Homo_sapiens

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