C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ngfi-A binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002881 Nab1 10090 - 1:52457294-52500679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069792 Nab1-001 52457294-52500679 protein_coding
  ENSMUST00000167732 Nab1-005 52459241-52467057 retained_intron
  ENSMUST00000168082 Nab1-004 52490310-52500315 processed_transcript
  ENSMUST00000170269 Nab1-002 52459218-52490736 protein_coding
  ENSMUST00000186764 Nab1-003 52457294-52500300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069792ENSMUST00000170269ENSMUST00000186764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069792 7.816±1.36 3.599±0.36 8.630±0.46 1.701±0.34 3.922±2.02 10.970±1.39 3.459±0.32 4.810±1.01 6.766±1.99 4.786±0.89 1.555±0.27 7.633±1.32 6.524±3.22 1.527±0.13
ENSMUST00000170269 N/A N/A N/A 5.733±0.00 1.766±0.00 N/A N/A 2.870±0.25 N/A 3.996±0.17 1.235±0.00 8.767±6.40 N/A 1.746±1.18
ENSMUST00000186764 2.612±0.27 1.703±0.63 5.138±0.16 1.343±0.58 1.669±0.56 N/A 0.731±0.13 0.815±0.19 2.088±0.76 3.147±0.50 0.227±0.00 4.323±1.24 1.387±0.45 1.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SM CIL_0002SM_0003 CGP 1:52163448-52500679
CIL_0002RZ CIL_0002RZ_0002 CGP 1:52457294-52651919

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001958 IGI endochondral ossification
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IGI regulation of transcription, DNA-templated
GO:0008134 IDA transcription factor binding
GO:0014037 IGI Schwann cell differentiation
GO:0042552 IGI myelination
GO:0045682 IGI regulation of epidermis development
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040700 nab1b NGFI-A binding protein 1b (EGR1 binding protein 1) protein_coding Danio_rerio
ENSDARG00000042940 nab1a NGFI-A binding protein 1a (EGR1 binding protein 1) protein_coding Danio_rerio
ENSG00000138386 NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) protein_coding Homo_sapiens

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