C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DiGeorge syndrome critical region gene 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003166 Dgcr2 10090 - 16:17839482-17894145 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000012152 Dgcr2-004 17840355-17891693 protein_coding
  ENSMUST00000066127 Dgcr2-003 17840361-17891657 protein_coding
  ENSMUST00000117082 Dgcr2-001 17841310-17891593 protein_coding
  ENSMUST00000117945 Dgcr2-002 17840355-17891660 protein_coding
  ENSMUST00000126919 Dgcr2-009 17892575-17894145 processed_transcript
  ENSMUST00000135229 Dgcr2-005 17839482-17891654 retained_intron
  ENSMUST00000155611 Dgcr2-006 17849311-17891649 retained_intron
  ENSMUST00000155943 Dgcr2-008 17856885-17894099 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012152ENSMUST00000066127ENSMUST00000117082ENSMUST00000117945ENSMUST00000135229ENSMUST00000155611ENSMUST00000155943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012152 23.980±5.95 34.764±6.19 10.494±0.83 22.708±1.72 23.387±7.38 37.889±3.37 6.786±0.52 17.791±2.94 12.250±5.66 25.417±3.68 4.506±1.07 39.526±17.26 7.059±3.00 23.962±2.84
ENSMUST00000066127 N/A N/A N/A N/A 9.365±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000117082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.101±1.47
ENSMUST00000117945 16.038±2.67 8.032±0.69 11.215±0.19 19.028±5.26 13.215±3.89 15.478±2.76 11.126±0.41 15.801±1.91 10.138±3.10 14.647±1.21 3.701±0.71 22.177±7.61 8.298±2.84 7.051±2.63
ENSMUST00000135229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.257±0.00
ENSMUST00000155611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.319±0.00
ENSMUST00000155943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.537±8.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004IH CIL_0004IH_0002 CGP 16:17835276-17891671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007155 IEA cell adhesion
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0042493 IDA response to drug

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042962 dgcr2 DiGeorge syndrome critical region gene 2 protein_coding Danio_rerio
ENSG00000070413 DGCR2 DiGeorge syndrome critical region gene 2 protein_coding Homo_sapiens

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