C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003528 Slc25a1 10090 - 16:17925211-17928219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003622 Slc25a1-001 17925211-17928219 protein_coding
  ENSMUST00000129270 Slc25a1-006 17925682-17927343 retained_intron
  ENSMUST00000131507 Slc25a1-004 17925716-17927416 protein_coding
  ENSMUST00000142022 Slc25a1-005 17927150-17928129 retained_intron
  ENSMUST00000147384 Slc25a1-002 17927417-17928209 retained_intron
  ENSMUST00000150925 Slc25a1-003 17926266-17927887 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003622ENSMUST00000129270ENSMUST00000131507ENSMUST00000142022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003622 376.315±50.75 343.266±70.38 29.230±3.02 38.445±0.96 604.432±130.45 81.235±7.91 18.721±8.88 126.638±6.19 90.295±58.64 82.474±2.34 2.112±1.52 84.201±32.13 10.679±5.88 18.640±1.39
ENSMUST00000129270 N/A N/A N/A 12.488±0.00 N/A N/A N/A N/A N/A N/A 0.875±0.24 29.530±4.75 7.371±2.30 8.229±0.00
ENSMUST00000131507 N/A N/A N/A 14.224±0.00 N/A N/A N/A N/A N/A N/A N/A 32.309±1.65 5.905±2.23 2.596±0.00
ENSMUST00000142022 N/A N/A N/A 12.637±0.00 N/A N/A N/A N/A N/A N/A N/A 30.357±0.00 9.245±1.74 7.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_000244 CIL_000244_0002 CGP 16:17913107-17928219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057110 slc25a1a solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1a protein_coding Danio_rerio
ENSG00000100075 SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 protein_coding Homo_sapiens

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