C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DiGeorge syndrome critical region gene 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003531 Dgcr6 10090 + 16:18052860-18071632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066027 Dgcr6-006 18066443-18071358 protein_coding
  ENSMUST00000076757 Dgcr6-201 18065159-18071342 protein_coding
  ENSMUST00000143343 Dgcr6-002 18052860-18071360 protein_coding
  ENSMUST00000148372 Dgcr6-004 18052892-18066508 processed_transcript
  ENSMUST00000148514 Dgcr6-008 18069480-18071343 processed_transcript
  ENSMUST00000148521 Dgcr6-005 18052876-18056559 processed_transcript
  ENSMUST00000151266 Dgcr6-001 18066403-18071363 protein_coding
  ENSMUST00000153123 Dgcr6-003 18066462-18071342 protein_coding
  ENSMUST00000155387 Dgcr6-007 18066448-18071632 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066027ENSMUST00000076757ENSMUST00000148514ENSMUST00000151266ENSMUST00000153123ENSMUST00000155387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066027 8.654±0.54 33.875±6.61 17.387±0.22 10.965±0.53 10.780±0.31 6.340±1.19 7.711±1.44 16.739±2.02 7.407±5.34 7.245±1.36 5.764±0.71 15.983±1.87 2.557±0.97 65.095±28.47
ENSMUST00000076757 N/A N/A N/A 44.517±0.00 N/A N/A N/A N/A N/A N/A 7.411±2.63 25.023±16.83 10.473±3.38 43.014±0.00
ENSMUST00000148514 N/A N/A N/A N/A 23.076±0.00 N/A N/A N/A N/A N/A N/A 16.073±3.47 3.810±0.00 N/A
ENSMUST00000151266 33.769±5.55 49.192±5.22 45.599±8.26 33.601±6.19 27.377±2.62 22.441±2.73 14.210±1.78 48.543±3.74 24.969±15.04 19.865±0.97 12.486±4.08 37.883±4.09 5.548±1.95 92.766±3.08
ENSMUST00000153123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.250±2.24 N/A 2.137±0.00 N/A
ENSMUST00000155387 N/A N/A N/A 6.947±1.03 4.035±0.00 N/A N/A N/A N/A N/A N/A 5.368±0.57 1.476±0.31 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0005EQ CIL_0005EQ_0003 CGP 16:18052860-18090203

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005500 dgcr6 DiGeorge syndrome critical region gene 6 protein_coding Danio_rerio
ENSG00000128185 DGCR6L DiGeorge syndrome critical region gene 6-like protein_coding Homo_sapiens
ENSG00000183628 DGCR6 DiGeorge syndrome critical region gene 6 protein_coding Homo_sapiens
ENSG00000278817 DGCR6 DiGeorge syndrome critical region gene 6 protein_coding Homo_sapiens

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