C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase I and transcript release factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004044 Ptrf 10090 - 11:100956733-100970887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060792 Ptrf-001 100956733-100970887 protein_coding
  ENSMUST00000132934 Ptrf-002 100964407-100970551 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060792
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060792 188.879±39.64 106.969±14.07 167.904±9.83 6.927±2.58 113.263±9.74 60.390±6.10 37.306±16.83 17.892±0.98 4.971±3.60 132.793±32.22 23.708±5.47 123.641±26.77 30.069±18.50 2.897±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046I CIL_00046I_0002 CGP 11:100885098-100970887
CIL_00046F CIL_00046F_0002 CGP 11:100956733-101063719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0005901 ISS caveola
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006361 IDA transcription initiation from RNA polymerase I promoter
GO:0006363 IDA termination of RNA polymerase I transcription
GO:0042134 IDA rRNA primary transcript binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 ISO protein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059362 ptrfb polymerase I and transcript release factor b protein_coding Danio_rerio
ENSDARG00000076411 ptrfa polymerase I and transcript release factor a protein_coding Danio_rerio
ENSG00000177469 PTRF polymerase I and transcript release factor protein_coding Homo_sapiens

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